SRR2983617

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

AB 5500xl Genetic Analyzer (SOLiD) RNA-seq of Gallus gallus chicken generating ~2.37 billion bases and ~27.9 million reads at Q30 85.6%; note the anomalous GC-content metric (0%) suggesting data quality issues or platform-specific artifacts—verify quality before genomic analysis.

Data type / assay

bulk-RNA-seq

Organism

Gallus gallus

Instrument

AB 5500xl Genetic Analyzer

Platform

ABI_SOLID

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2373723260 reported

total reads 27926156 reported

n content pct 0 measured

pct q20 bases 90.6 measured

pct q30 bases 85.6 measured

gc content pct 0 measured

mean read length 51 measured

mean base quality 36.8 measured

adapter content pct 0 measured

duplication rate pct 49.27 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.6 measured ×1 78%

mean base quality 36.8 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 49.27 measured ×0.4 57%

QC cost 41 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0