SRR3033262

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Apis mellifera honey bee RNA-seq via HiSeq 2500 (23.7M reads, 4.78B bases, 96.6% Q20, 90.9% Q30, 47.6% GC). The substantial read depth combined with moderate-to-good quality supports comprehensive gene expression profiling, identification of novel transcripts, and isoform-level analysis for studying bee health, behavior, and colony dynamics.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4777788032 reported

total reads 23652416 reported

n content pct 0.002 measured

pct q20 bases 96.6 measured

pct q30 bases 90.9 measured

gc content pct 47.6 measured

mean read length 101 measured

mean base quality 35.3 measured

adapter content pct 1.38 measured

duplication rate pct 55.55 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.9 measured ×1 100%

mean base quality 35.3 measured ×0.6 100%

adapter content pct 1.38 measured ×0.4 100%

duplication rate pct 55.55 measured ×0.4 43%

QC cost 1.1 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0