SRR3056857

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read bulk RNA-seq from Periplaneta americana on an Illumina HiSeq 2000 with 25.8 million reads spanning 4.6 billion bases and strong Q30 coverage (95.8%). The minimal N-content (0.002%) and balanced GC composition (45.1%) support robust expression profiling in this cockroach.

Data type / assay

bulk-RNA-seq

Organism

Periplaneta americana

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4566086133 reported

total reads 25780592 reported

n content pct 0.002 measured

pct q20 bases 99.2 measured

pct q30 bases 95.8 measured

gc content pct 45.1 measured

mean read length 89.3 measured

mean base quality 37.3 measured

adapter content pct 0 measured

duplication rate pct 40.03 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.8 measured ×1 100%

mean base quality 37.3 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 40.03 measured ×0.4 78%

QC cost 41 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0