SRR306835

SRA first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Pan paniscus (bonobo) RNA-seq on Illumina Genome Analyzer IIx (28.5M reads, 2.17B bases) with perfect base quality (100% Q20 and Q30, 50.4% GC). Despite the older platform's short reads, the exceptional accuracy and large read count enable robust detection of primate gene expression, supporting comparative transcriptomics between ape species.

Data type / assay

bulk-RNA-seq

Organism

Pan paniscus

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2165360992 reported

total reads 28491592 reported

n content pct 0.961 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 50.4 measured

mean read length 76 measured

mean base quality 30 measured

adapter content pct 0.19 measured

duplication rate pct 29.46 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0.19 measured ×0.4 100%

duplication rate pct 29.46 measured ×0.4 100%

QC cost 59 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0