SRR3113351

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Large-scale Callosobruchus maculatus bulk-RNA transcriptome via HiSeq 2000 (51.4 million reads, 10.3 billion bases, 99.1% Q20, 96.9% Q30). The exceptional depth and quality metrics support detection of lowly expressed genes, identification of novel isoforms, and comprehensive characterization of the seed beetle transcriptome across tissues or conditions.

Data type / assay

bulk-RNA-seq

Organism

Callosobruchus maculatus

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 10285921600 reported

total reads 51429608 reported

n content pct 0.002 measured

pct q20 bases 99.1 measured

pct q30 bases 96.9 measured

gc content pct 42.9 measured

mean read length 100 measured

mean base quality 37.4 measured

adapter content pct 1.27 measured

duplication rate pct 27.96 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.9 measured ×1 100%

mean base quality 37.4 measured ×0.6 100%

adapter content pct 1.27 measured ×0.4 100%

duplication rate pct 27.96 measured ×0.4 100%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0