SRR3138154

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina HiSeq 2000 RNA-seq of Lasius niger with 14.4 million high-quality reads (97.1% Q20, 94.6% Q30, 43.5% GC) spanning 2.9 billion bases. Robust for expression profiling and SNP discovery in this model social insect. Biological replication and experimental condition not specified.

Data type / assay

bulk-RNA-seq

Organism

Lasius niger

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2912223294 reported

total reads 14416947 reported

n content pct 0.111 measured

pct q20 bases 97.1 measured

pct q30 bases 94.6 measured

gc content pct 43.5 measured

mean read length 101 measured

mean base quality 36.4 measured

adapter content pct 3.46 measured

duplication rate pct 47.95 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.6 measured ×1 100%

mean base quality 36.4 measured ×0.6 100%

adapter content pct 3.46 measured ×0.4 92%

duplication rate pct 47.95 measured ×0.4 60%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0