SRR3141278

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Large-scale short-read bulk RNA-seq from ant (Lasius niger) achieving A-grade with perfect 100/100 score on 7.9 billion bases. Strong base quality (Q30=91%, mean 35.4) and low adapter content (1.33%) support high-confidence reuse, despite moderate duplication at 23.05%.

Data type / assay

bulk-RNA-seq

Organism

Lasius niger

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7875530550 reported

total reads 38987775 reported

n content pct 0.003 measured

pct q20 bases 94.3 measured

pct q30 bases 91 measured

gc content pct 40.2 measured

mean read length 101 measured

mean base quality 35.4 measured

adapter content pct 1.33 measured

duplication rate pct 23.05 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91 measured ×1 100%

mean base quality 35.4 measured ×0.6 100%

adapter content pct 1.33 measured ×0.4 100%

duplication rate pct 23.05 measured ×0.4 100%

QC cost 48 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0