Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR315361

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Short-read RNA-seq on the early Genome Analyzer II platform provides 16 million reads from Bombyx mori (silkworm) with moderate quality (92.5% Q20, 83% Q30), supporting basic gene expression quantification for silk production or developmental studies. The dataset enables comparative transcriptomics in this economically important insect. Platform age and moderate Q30 suggest some read degradation; filter low-quality bases before alignment for best results.

Data type / assay
bulk-RNA-seq
Organism
Bombyx mori
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1212967200 reported
total reads 16172896 reported
n content pct 0.165 measured
pct q20 bases 92.5 measured
pct q30 bases 83 measured
gc content pct 44.4 measured
mean read length 75 measured
mean base quality 33.8 measured
adapter content pct 0 measured
duplication rate pct 32.11 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83 measured ×1 65%
mean base quality 33.8 measured ×0.6 97%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 32.11 measured ×0.4 95%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0