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SRR3156643
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
56/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Colletotrichum higginsianum IMI 349063
Instrument
PacBio RS II
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
10.82
measured
checksum ok
yes
reported
total bases
1536649661
reported
total reads
163482
reported
n content pct
0
measured
sampled bases
62204196
measured
sampled reads
10276
measured
gc content pct
50.8
measured
polyg tail pct
0.07
measured
read length sd
7005.9
measured
quality dropoff
0.2
measured
read length max
63103
measured
read length min
11
measured
read length n50
13630
measured
max base quality
14
measured
mean read length
6053.3
measured
max n pct per pos
0
measured
mean base quality
7.8
measured
pct reads lt 100bp
0.19
measured
read length median
2528.5
measured
adapter content pct
0
measured
median read quality
3.8
measured
duplication rate pct
0.09
measured
overrepresented top pct
0.06
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 56/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
read length n50
13630
measured
×1
63%
mean base quality
7.8
measured
×0.8
0%
duplication rate pct
0.09
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
31 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0