SRR3156665

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

52/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Colletotrichum higginsianum IMI 349063

Instrument

PacBio RS II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 9.69 measured

checksum ok yes reported

total bases 999549168 reported

total reads 163482 reported

n content pct 0 measured

sampled bases 62930076 measured

sampled reads 17659 measured

gc content pct 48.6 measured

polyg tail pct 0.03 measured

read length sd 5419.4 measured

quality dropoff 0.1 measured

read length max 69585 measured

read length min 11 measured

read length n50 11489 measured

max base quality 14 measured

mean read length 3563.6 measured

max n pct per pos 0 measured

mean base quality 7.1 measured

pct reads lt 100bp 1.33 measured

read length median 1092 measured

adapter content pct 0.01 measured

median read quality 1.5 measured

duplication rate pct 0 measured

overrepresented top pct 0.01 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 52/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

read length n50 11489 measured ×1 50%

mean base quality 7.1 measured ×0.8 0%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0.01 measured ×0.4 100%

QC cost 46 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0