SRR3179949

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq from Bemisia tabaci on an Illumina HiSeq 2500, yielding 7.1 million short reads with good Q30 coverage (89%) across 2.1 billion bases. The elevated N-content (0.041%) and moderate GC composition (44.9%) enable expression profiling in whitefly populations with quality filtering.

Data type / assay

bulk-RNA-seq

Organism

Bemisia tabaci

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2133733586 reported

total reads 7065343 reported

n content pct 0.041 measured

pct q20 bases 93.1 measured

pct q30 bases 89 measured

gc content pct 44.9 measured

mean read length 151 measured

mean base quality 34.4 measured

adapter content pct 20.16 measured

duplication rate pct 43.73 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89 measured ×1 95%

mean base quality 34.4 measured ×0.6 100%

adapter content pct 20.16 measured ×0.4 0%

duplication rate pct 43.73 measured ×0.4 70%

QC cost 47 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0