SRR3222758

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 76752826600 reported

total reads 383764133 reported

mean coverage 24.8 extrapolated

n content pct 0.021 measured

pct q20 bases 98.4 measured

pct q30 bases 95.7 measured

gc content pct 53.1 measured

mean read length 100 measured

mean base quality 39.2 measured

adapter content pct 67.01 measured

duplication rate pct 10.49 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 24.8 extrapolated ×1.2 76%

pct q30 bases 95.7 measured ×1 100%

duplication rate pct 10.49 measured ×0.5 92%

adapter content pct 67.01 measured ×0.4 0%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0