SRR3225706

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Perfect-scored amplicon library with 94.6% Q30 bases and zero adapters; extreme duplication (93%) is expected and appropriate for PCR-amplified amplicon protocols and synthetic metagenome profiling.

Data type / assay

amplicon

Organism

synthetic metagenome

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5340745 reported

total reads 14072 reported

n content pct 0.001 measured

pct q20 bases 97.2 measured

pct q30 bases 94.6 measured

gc content pct 52.5 measured

mean read length 379.5 measured

mean base quality 36.4 measured

adapter content pct 0 measured

duplication rate pct 93.48 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.6 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0