Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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SRR327340

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

38/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Amplicon sequencing of Schizosaccharomyces pombe on Illumina Genome Analyzer II, generating 45.9 million targeted short reads from PCR products with moderate per-base accuracy (92.7% Q20, 71.4% Q30). Suitable for marker-based genotyping, strain identification, or targeted locus amplification. Amplicon-specific biases (coverage skew, primer artifacts) apply.

Data type / assay
amplicon
Organism
Schizosaccharomyces pombe
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2295926350 reported
total reads 45918527 reported
n content pct 0.096 measured
pct q20 bases 92.7 measured
pct q30 bases 71.4 measured
gc content pct 40.7 measured
mean read length 50 measured
mean base quality 29.3 measured
adapter content pct 0 measured
duplication rate pct 73.56 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 38/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 71.4 measured ×1 7%
adapter content pct 0 measured ×0.5 100%
QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0