SRR327423

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Ganoderma lucidum G.260125-1

Instrument

454 GS FLX Titanium

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 266825401 reported

total reads 496176 reported

n content pct 0.012 measured

pct q20 bases 94.1 measured

pct q30 bases 83.1 measured

gc content pct 54.9 measured

mean read length 391.7 measured

mean base quality 35.4 measured

adapter content pct 0 measured

duplication rate pct 13.91 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.1 measured ×1 66%

duplication rate pct 13.91 measured ×0.5 82%

adapter content pct 0 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0