Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

SRR3290615

SRA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Deep whole-genome short-read sequencing of Bos taurus on the HiSeq 2500 achieves 21.3× coverage with 230 million reads at high base quality (96.4% Q20, 92.9% Q30), enabling genome-wide SNP discovery and copy-number profiling in cattle. The dataset supports breeding applications and disease association studies in this economically important livestock. Coverage is well-suited for reliable genotyping at all allele frequencies.

Data type / assay
WGS
Organism
Bos taurus
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 57477992500 reported
total reads 229911970 reported
mean coverage 21.3 extrapolated
n content pct 0.005 measured
pct q20 bases 96.4 measured
pct q30 bases 92.9 measured
gc content pct 43.1 measured
mean read length 125 measured
mean base quality 36.1 measured
adapter content pct 0 measured
duplication rate pct 5.18 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 21.3 extrapolated ×1.2 61%
pct q30 bases 92.9 measured ×1 100%
duplication rate pct 5.18 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0