Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRR3290632

SRA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Deep whole-genome short-read sequencing of Bos taurus on the HiSeq 2500 generates 239 million high-quality reads (96% Q20, 92% Q30) at 22.1× coverage, enabling robust genome-wide SNP discovery and genomic selection in cattle. The dataset supports livestock breeding programs and disease mapping studies. High quality and coverage provide excellent sensitivity for rare variant detection.

Data type / assay
WGS
Organism
Bos taurus
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 59791830000 reported
total reads 239167320 reported
mean coverage 22.1 extrapolated
n content pct 0.002 measured
pct q20 bases 96 measured
pct q30 bases 92 measured
gc content pct 42.7 measured
mean read length 125 measured
mean base quality 36 measured
adapter content pct 0 measured
duplication rate pct 5.03 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 22.1 extrapolated ×1.2 64%
pct q30 bases 92 measured ×1 100%
duplication rate pct 5.03 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0