SRR329456

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

454 GS FLX Titanium RNA-seq of A. albopictus mosquito generating ~334 million bases and ~668K reads at Q30 84.5%; the longer read length aids isoform reconstruction despite lower read count typical of 454 chemistry.

Data type / assay

bulk-RNA-seq

Organism

Aedes albopictus

Instrument

454 GS FLX Titanium

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 334679501 reported

total reads 668269 reported

n content pct 0.01 measured

pct q20 bases 94.7 measured

pct q30 bases 84.5 measured

gc content pct 50.8 measured

mean read length 372.6 measured

mean base quality 35.8 measured

adapter content pct 0 measured

duplication rate pct 20.1 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.5 measured ×1 73%

mean base quality 35.8 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 20.1 measured ×0.4 100%

QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0