Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR3381529

ENA first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina HiSeq 2000 whole-genome sequencing of *Acinetobacter baumannii*, a Gram-negative nosocomial pathogen, yielding ~8.1M short reads (84.2% Q30 bases, 39.4% GC content). Suitable for SNP discovery, variant annotation, and phylogenomic comparisons in this clinically important bacterium, though short reads limit structural-variant detection. Search: bacterial genome, WGS, pathogenic *Acinetobacter*.

Data type / assay
WGS
Organism
Acinetobacter baumannii
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2031559000 reported
total reads 8126236 reported
n content pct 0 measured
pct q20 bases 91.1 measured
pct q30 bases 84.2 measured
gc content pct 39.4 measured
mean read length 125 measured
mean base quality 34.2 measured
adapter content pct 0.52 measured
duplication rate pct 17.09 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.2 measured ×1 71%
duplication rate pct 17.09 measured ×0.5 72%
adapter content pct 0.52 measured ×0.4 100%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0