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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
43/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: partly measured
Data type / assay
WGS
Organism
Arabidopsis thaliana
Instrument
PacBio RS II
Platform
PACBIO_SMRT
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
7.09
measured
checksum ok
yes
reported
total bases
287260145
reported
total reads
163482
reported
mean coverage
2.1
extrapolated
n content pct
0
measured
sampled bases
66571230
measured
sampled reads
43192
measured
gc content pct
39.5
measured
polyg tail pct
0
measured
read length sd
4171.4
measured
quality dropoff
0.1
measured
read length max
121179
measured
read length min
15
measured
read length n50
9937
measured
max base quality
15
measured
mean read length
1541.3
measured
max n pct per pos
0
measured
mean base quality
5.9
measured
pct reads lt 100bp
1.77
measured
read length median
558
measured
adapter content pct
0
measured
median read quality
1
measured
duplication rate pct
0.09
measured
overrepresented top pct
0.07
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 43/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
2.1
extrapolated
×1.2
0%
duplication rate pct
0.09
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
24 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0