Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR343028

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

78/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Short-read RNA-seq from Aedes aegypti (dengue and Zika vector) on the early Genome Analyzer platform shows perfect base quality (100% Q20, 100% Q30) across 12.6 million reads. The dataset supports gene expression profiling of innate immunity, metabolism, or vector competence in this disease vector mosquito. Legacy platform status and small dataset size (~500 Mb) suggest use for validation or comparative studies rather than primary quantification.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 505485800 reported
total reads 12637145 reported
n content pct 0.068 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 51.2 measured
mean read length 40 measured
mean base quality 30 measured
adapter content pct 0.01 measured
duplication rate pct 43.84 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 78/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
mean base quality 30 measured ×0.6 33%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 43.84 measured ×0.4 69%
QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0