Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR343064

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Short-read RNA-seq from Cryptolaemus montrouzieri, a beneficial biocontrol beetle, on the HiSeq 2000 shows perfectly high quality bases (100% Q20, 100% Q30) across 13 million reads and 2.4 billion bases. The dataset enables gene expression profiling of feeding, reproduction, or host-seeking behaviors relevant to biological pest control. Exceptional base quality supports sensitive variant discovery and detailed isoform analysis if needed.

Data type / assay
bulk-RNA-seq
Organism
Cryptolaemus montrouzieri
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2400000120 reported
total reads 13333334 reported
n content pct 0.001 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 40 measured
mean read length 90 measured
mean base quality 30 measured
adapter content pct 0 measured
duplication rate pct 48.85 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
mean base quality 30 measured ×0.6 33%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 48.85 measured ×0.4 58%
QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0