SRR3439491

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Excellent-depth HiSeq 4000 RNA-seq from Homo sapiens (40.7M reads, 11.9 billion bases, 46% GC, 83.2% ≥Q30) enables sensitive human transcriptome profiling. The deep dataset supports detection of lowly-expressed genes and isoform discovery.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 11873096539 reported

total reads 40733342 reported

n content pct 0.001 measured

pct q20 bases 90.6 measured

pct q30 bases 83.2 measured

gc content pct 46 measured

mean read length 145.9 measured

mean base quality 33.2 measured

adapter content pct 0.12 measured

duplication rate pct 28.89 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.2 measured ×1 66%

mean base quality 33.2 measured ×0.6 87%

adapter content pct 0.12 measured ×0.4 100%

duplication rate pct 28.89 measured ×0.4 100%

QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0