SRR3439494

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

79/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 4000 RNA-seq from Homo sapiens (22.9M reads, 6.4 billion bases, 41.8% GC, 82.7% ≥Q30) enables human transcriptome profiling. The dataset addresses tissue-specific expression and identification of novel transcripts.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6363966317 reported

total reads 22906716 reported

n content pct 0.001 measured

pct q20 bases 89.9 measured

pct q30 bases 82.7 measured

gc content pct 41.8 measured

mean read length 139.1 measured

mean base quality 33 measured

adapter content pct 0.26 measured

duplication rate pct 35.27 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 79/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.7 measured ×1 64%

mean base quality 33 measured ×0.6 83%

adapter content pct 0.26 measured ×0.4 100%

duplication rate pct 35.27 measured ×0.4 88%

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0