Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR3441113

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

53/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome short-read sequencing of C. elegans on the HiSeq 2500 provides shallow 3.1× coverage with 1.7 million reads at moderate base quality (94.9% Q20, 84.9% Q30), suitable only for presence/absence genotyping at common variants or low-depth population snapshots. The dataset has limited power for comprehensive variant discovery or rare allele detection. Use primarily for SNP array validation or as a screening pre-filter before deeper sequencing.

Data type / assay
WGS
Organism
Caenorhabditis elegans
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 305810991 reported
total reads 1721153 reported
mean coverage 3.1 extrapolated
n content pct 0.009 measured
pct q20 bases 94.9 measured
pct q30 bases 84.9 measured
gc content pct 37.2 measured
mean read length 88.8 measured
mean base quality 34.1 measured
adapter content pct 0 measured
duplication rate pct 4.76 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 53/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 3.1 extrapolated ×1.2 0%
pct q30 bases 84.9 measured ×1 75%
duplication rate pct 4.76 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0