Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR3441151

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome short-read sequencing of C. elegans on the HiSeq 2500 delivers 14× coverage with 7.8 million reads at high base quality (98.6% Q20, 95.3% Q30), enabling detection of most common variants across the ~100 Mb genome. The dataset supports forward genetic mapping and mutation discovery in C. elegans screens. Adequate coverage for reliable genotyping at typical allele frequencies, though rare variant sensitivity may be reduced.

Data type / assay
WGS
Organism
Caenorhabditis elegans
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1402811309 reported
total reads 7805712 reported
mean coverage 14 extrapolated
n content pct 0.014 measured
pct q20 bases 98.6 measured
pct q30 bases 95.3 measured
gc content pct 38 measured
mean read length 89.9 measured
mean base quality 37.1 measured
adapter content pct 0 measured
duplication rate pct 6.69 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 14 extrapolated ×1.2 27%
pct q30 bases 95.3 measured ×1 100%
duplication rate pct 6.69 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0