Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR3441180

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

71/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Lower-depth whole-genome sequencing of *Caenorhabditis elegans* on HiSeq 2500 (~13.9x coverage, ~7.8M reads, 1.39 Gb) with good base quality (89.8% Q30). Best suited for population-level surveys or SNP discovery in bulk samples; investigators requiring high-confidence calls at allele frequencies <5% should seek higher-coverage alternatives. Search: *C. elegans*, population genomics, low-coverage WGS.

Data type / assay
WGS
Organism
Caenorhabditis elegans
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1391616551 reported
total reads 7761451 reported
mean coverage 13.9 extrapolated
n content pct 0.009 measured
pct q20 bases 96.7 measured
pct q30 bases 89.8 measured
gc content pct 37.9 measured
mean read length 89.7 measured
mean base quality 35.4 measured
adapter content pct 0 measured
duplication rate pct 7.09 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 71/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 13.9 extrapolated ×1.2 27%
pct q30 bases 89.8 measured ×1 99%
duplication rate pct 7.09 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 44 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0