SRR3441191

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing of *Caenorhabditis elegans* on HiSeq 2500 with 18.6x coverage (~10.4M reads, 1.86 Gb), excellent base quality (93.1% Q30), and perfect base composition (0% N content), supporting reliable variant calling in a clean dataset. Well-suited for mapping projects and bulk population sequencing. Search: *C. elegans* WGS, clean genome sequence.

Data type / assay

WGS

Organism

Caenorhabditis elegans

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1858909465 reported

total reads 10420554 reported

mean coverage 18.6 extrapolated

n content pct 0 measured

pct q20 bases 97.8 measured

pct q30 bases 93.1 measured

gc content pct 37.5 measured

mean read length 89.3 measured

mean base quality 36.4 measured

adapter content pct 0 measured

duplication rate pct 3.65 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 18.6 extrapolated ×1.2 48%

pct q30 bases 93.1 measured ×1 100%

duplication rate pct 3.65 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 40 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0