SRR345196

ENA first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read bulk RNA-seq of laboratory mouse *Mus musculus* on Illumina Genome Analyzer II, yielding 9.76M reads (352 Mb) with perfect base quality (100% Q20 and Q30) but elevated N content (1.295%), representing a smaller dataset suitable for focused gene-discovery studies. High per-read quality compensates for modest size in candidate-gene analysis. Search: mouse transcriptomics, targeted RNA-seq.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 351512820 reported

total reads 9764245 reported

n content pct 1.295 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 44.6 measured

mean read length 36 measured

mean base quality 30 measured

adapter content pct 0 measured

duplication rate pct 50.72 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 50.72 measured ×0.4 54%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0