Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR3452112

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Exceptionally high-quality whole-genome sequencing of *Caenorhabditis elegans* on HiSeq 2500 with 23.3x coverage (~12.9M reads, 2.33 Gb), perfect base quality (99.6% Q30, 100% Q20, zero N content), providing a clean reference dataset for variant calling and genome mapping. Pristine base composition and moderate-to-high coverage support confident SNP and indel detection. Search: *C. elegans* WGS, reference-quality genome.

Data type / assay
WGS
Organism
Caenorhabditis elegans
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2326169625 reported
total reads 12855897 reported
mean coverage 23.3 extrapolated
n content pct 0 measured
pct q20 bases 100 measured
pct q30 bases 99.6 measured
gc content pct 35 measured
mean read length 93.9 measured
mean base quality 38.4 measured
adapter content pct 0.56 measured
duplication rate pct 2.75 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 23.3 extrapolated ×1.2 70%
pct q30 bases 99.6 measured ×1 100%
duplication rate pct 2.75 measured ×0.5 100%
adapter content pct 0.56 measured ×0.4 100%
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0