Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR3452124

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Small-RNA/miRNA-seq of yellow-fever mosquito *Aedes aegypti* on Illumina HiSeq 2000, yielding 43M reads (2.15 Gb) with good base quality (94.1% Q30) and 50.7% GC content, enabling comprehensive identification and quantification of microRNAs and other small regulatory RNAs. Distinct from bulk RNA-seq and suitable for miRNA biomarker discovery in disease vectors. Search: mosquito miRNA, small RNA, vector genomics, microRNA profiling.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2153863900 reported
total reads 43077278 reported
n content pct 0.026 measured
pct q20 bases 96.4 measured
pct q30 bases 94.1 measured
gc content pct 50.7 measured
mean read length 50 measured
mean base quality 37.3 measured
adapter content pct 0 measured
duplication rate pct 67.61 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.1 measured ×1 100%
mean base quality 37.3 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 67.61 measured ×0.4 16%
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0