Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

SRR3452136

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome short-read sequencing on the HiSeq 2500 achieves 22× coverage of Caenorhabditis elegans with exceptional base quality (100% Q20, 98.8% Q30), enabling confident SNP discovery and small indel detection across the ~100 Mb nematode genome. This dataset supports forward genetic mapping and population genomics in C. elegans. High coverage and quality permit reliable genotyping even at low allele frequencies.

Data type / assay
WGS
Organism
Caenorhabditis elegans
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2224137804 reported
total reads 13239500 reported
mean coverage 22.2 extrapolated
n content pct 0 measured
pct q20 bases 100 measured
pct q30 bases 98.8 measured
gc content pct 35 measured
mean read length 90.7 measured
mean base quality 37.7 measured
adapter content pct 0.1 measured
duplication rate pct 3 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 22.2 extrapolated ×1.2 65%
pct q30 bases 98.8 measured ×1 100%
duplication rate pct 3 measured ×0.5 100%
adapter content pct 0.1 measured ×0.4 100%
QC cost 58 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0