Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR3452180

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome short-read sequencing of C. elegans on the HiSeq 2500 achieves 19.5× coverage with pristine base quality (100% Q20, 98.5% Q30), enabling reliable variant discovery and structural variant detection across the ~100 Mb genome. The dataset supports whole-genome association studies and comprehensive genotyping in forward genetic screens. High coverage and exceptional quality permit confident identification of rare mutations and small indels.

Data type / assay
WGS
Organism
Caenorhabditis elegans
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1954313625 reported
total reads 10958976 reported
mean coverage 19.5 extrapolated
n content pct 0 measured
pct q20 bases 100 measured
pct q30 bases 98.5 measured
gc content pct 34 measured
mean read length 86.1 measured
mean base quality 37.8 measured
adapter content pct 0.08 measured
duplication rate pct 2.71 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 19.5 extrapolated ×1.2 52%
pct q30 bases 98.5 measured ×1 100%
duplication rate pct 2.71 measured ×0.5 100%
adapter content pct 0.08 measured ×0.4 100%
QC cost 58 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0