Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR346106

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Large-scale short-read bulk RNA-seq of silkworm *Bombyx mori* on Illumina Genome Analyzer II, generating 18.8M reads (2.83 Gb) with perfect base quality (100% Q20 and Q30), suitable for reference-grade transcriptome assembly and comprehensive gene-expression profiling. Premium resource combining large read count and pristine quality for insect genomics. Search: silkworm transcriptome, insect model organism, lepidopteran genomics.

Data type / assay
bulk-RNA-seq
Organism
Bombyx mori
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2827007250 reported
total reads 18846715 reported
n content pct 0.139 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 45.7 measured
mean read length 75 measured
mean base quality 30 measured
adapter content pct 0.01 measured
duplication rate pct 48.45 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
mean base quality 30 measured ×0.6 33%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 48.45 measured ×0.4 59%
QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0