SRR346390

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read bulk RNA-seq of Asian tiger mosquito *Aedes albopictus* on Illumina Genome Analyzer II, generating 5.13M reads with perfect base quality (100% Q20 and Q30), well-suited for transcript discovery in this disease-vector species. The older platform limits per-sample depth but preserves per-read accuracy. Applications: mosquito transcriptomics, vector biology, disease-vector genomics.

Data type / assay

bulk-RNA-seq

Organism

Aedes albopictus

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 194926814 reported

total reads 5129653 reported

n content pct 0.047 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 45.9 measured

mean read length 38 measured

mean base quality 30 measured

adapter content pct 0 measured

duplication rate pct 75.87 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 75.87 measured ×0.4 0%

QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0