SRR351905

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq from Cucumis sativus on an Illumina Genome Analyzer II, yielding 24.5 million short reads at maximum Q30 quality (100%) across 3.7 billion bases. The elevated N-content (0.046%) reflects older sequencing chemistry; with balanced GC composition (46.9%), this dataset supports plant transcriptome studies when appropriate filtering is applied.

Data type / assay

bulk-RNA-seq

Organism

Cucumis sativus

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3680282250 reported

total reads 24535215 reported

n content pct 0.046 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 46.9 measured

mean read length 75 measured

mean base quality 30 measured

adapter content pct 0.11 measured

duplication rate pct 26.82 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0.11 measured ×0.4 100%

duplication rate pct 26.82 measured ×0.4 100%

QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0