Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR351910

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina Genome Analyzer II short-read RNA-seq of Cucumis sativus (cucumber) with 22.5 million reads and perfect Q30 100% (Q20 100%) provides outstanding-quality plant transcriptomics for this model crop species, enabling fruit biology and pathogen-response research. The 44.7% GC and flawless base accuracy support definitive de novo assembly, isoform discovery, and sensitive expression profiling across developmental and disease conditions.

Data type / assay
bulk-RNA-seq
Organism
Cucumis sativus
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3370821900 reported
total reads 22472146 reported
n content pct 0.069 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 44.7 measured
mean read length 75 measured
mean base quality 30 measured
adapter content pct 0.2 measured
duplication rate pct 26.93 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
mean base quality 30 measured ×0.6 33%
adapter content pct 0.2 measured ×0.4 100%
duplication rate pct 26.93 measured ×0.4 100%
QC cost 40 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0