Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR3540303

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

miRNA-Seq (Illumina HiSeq 2000, Mus musculus), grade B. Perfect base quality—pct_q30_bases=100 and exceptional mean_base_quality=71—make this highly reusable for miRNA expression despite extreme duplication (96.12%) inherent to small RNA capture. Evidence strength is low; reading is provisional.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 700560987 reported
total reads 14297163 reported
n content pct 0.002 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 51.4 measured
mean read length 49 measured
mean base quality 71 measured
adapter content pct 0 measured
duplication rate pct 96.12 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
mean base quality 71 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 96.12 measured ×0.4 0%
QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 89