Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR3652244

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:opus

This is a mouse miRNA-Seq library (short ~50 bp single-end Illumina HiSeq 2000 reads), and the data are technically clean: pct_q30_bases of 92.3% and a mean base quality of 34.8 indicate excellent per-base accuracy, while zero adapter content and negligible N content (0.024%) mean the reads need little trimming before use. What pulled the grade down to a B is the duplication_rate_pct of 84.7%, which scored 0 and is the single largest drag on the score — though for a small-RNA library this is partly expected, since miRNAs are short, highly abundant, and sequenced to saturation, so a large share of "duplicates" are genuine biological copies rather than PCR artifacts, and you should deduplicate cautiously (or not at all) for quantification. All scored metrics here were directly measured (evidence_strength is reported on measured QC fields), so the read is not provisional, but note that the depth and library-complexity caveats of miRNA-Seq mean this dataset is well-suited to miRNA expression profiling and less so to applications needing high unique-fragment diversity.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 595652700 reported
total reads 11913054 reported
n content pct 0.024 measured
pct q20 bases 95.2 measured
pct q30 bases 92.3 measured
gc content pct 46.1 measured
mean read length 50 measured
mean base quality 34.8 measured
adapter content pct 0 measured
duplication rate pct 84.7 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.3 measured ×1 100%
mean base quality 34.8 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 84.7 measured ×0.4 0%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 89