SRR3664412

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: reported

Data type / assay

bulk-RNA-seq

Organism

Arabidopsis thaliana

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Files available

FASTQ

Metrics (value · how obtained)

base count 2275498848 reported

read count 11609688 reported

parent study PRJNA323955 reported

library layout PAIRED reported

read length bp 196 extrapolated

library strategy RNA-Seq reported

checksums present yes reported

How this grade was computed

Weighted mean of 6 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

raw data available reported ×1.4 100%

depth reported ×1.2 44%

read length reported ×0.8 100%

layout paired reported ×0.6 100%

integrity verifiable reported ×0.6 100%

instrument declared reported ×0.4 100%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-meta-1.0 · provisional — verify independently