SRR3708803

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq from Apis mellifera on an Illumina Genome Analyzer II, producing 38.7 million short reads with moderate quality (93.7% Q30 bases) across 1.4 billion bases. The higher N-content (0.02%) reflects older sequencing chemistry, but the dataset supports expression studies in honeybees when quality filtering is applied.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1391745708 reported

total reads 38659603 reported

n content pct 0.02 measured

pct q20 bases 98.5 measured

pct q30 bases 93.7 measured

gc content pct 46.8 measured

mean read length 36 measured

mean base quality 37 measured

adapter content pct 0 measured

duplication rate pct 91.06 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.7 measured ×1 100%

mean base quality 37 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 91.06 measured ×0.4 0%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0