Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR3726155

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

64/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

NextSeq 500 short-read RNA-seq of Harpegnathos saltator (Indian jumping ant) with 15.3 million reads and 79% Q30 provides modest-depth NextSeq transcriptomics for this social-insect model, with moderate platform quality. The 50% GC and read depth enable expression quantification across ant castes and behaviors, though shorter read lengths and quality constraints limit isoform reconstruction.

Data type / assay
bulk-RNA-seq
Organism
Harpegnathos saltator
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1149063450 reported
total reads 15320846 reported
n content pct 0.001 measured
pct q20 bases 84.4 measured
pct q30 bases 79 measured
gc content pct 50 measured
mean read length 75 measured
mean base quality 31.2 measured
adapter content pct 3.66 measured
duplication rate pct 10.91 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 64/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 79 measured ×1 45%
mean base quality 31.2 measured ×0.6 53%
adapter content pct 3.66 measured ×0.4 91%
duplication rate pct 10.91 measured ×0.4 100%
QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0