Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR3726192

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 short-read RNA-seq of Harpegnathos saltator (Indian jumping ant) with 19 million reads and 91.8% Q30 provides transcriptomics data for this social-insect model, enabling caste-differentiation and reproductive-behavior gene profiling. The 43.2% GC and good data quality support tissue-specific and life-stage expression analysis across worker and queen phenotypes.

Data type / assay
bulk-RNA-seq
Organism
Harpegnathos saltator
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 875292278 reported
total reads 19028093 reported
n content pct 0 measured
pct q20 bases 95.4 measured
pct q30 bases 91.8 measured
gc content pct 43.2 measured
mean read length 46 measured
mean base quality 36.9 measured
adapter content pct 11.85 measured
duplication rate pct 34.93 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.8 measured ×1 100%
mean base quality 36.9 measured ×0.6 100%
adapter content pct 11.85 measured ×0.4 45%
duplication rate pct 34.93 measured ×0.4 89%
QC cost 40 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0