SRR3748963

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq from Nasonia vitripennis on an Illumina HiSeq 2000, producing 35.7 million short reads with good Q30 coverage (88.4%) across 7.2 billion bases. The minimal N-content (0.01%) and moderate GC composition (42.3%) provide substantial depth for expression profiling in this parasitoid wasp.

Data type / assay

bulk-RNA-seq

Organism

Nasonia vitripennis

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7213314556 reported

total reads 35709478 reported

n content pct 0.01 measured

pct q20 bases 95 measured

pct q30 bases 88.4 measured

gc content pct 42.3 measured

mean read length 101 measured

mean base quality 34.8 measured

adapter content pct 0.41 measured

duplication rate pct 15.56 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.4 measured ×1 92%

mean base quality 34.8 measured ×0.6 100%

adapter content pct 0.41 measured ×0.4 100%

duplication rate pct 15.56 measured ×0.4 100%

QC cost 51 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0