Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR384894

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:opus

This is a human bulk RNA-seq library (Illumina HiSeq 2000, ~11.8M reads at 49 bp) that earns a solid B (81/100) on a fully measured QC pass, so the reading is not provisional — the four scored metrics were all directly observed rather than extrapolated. The grade is propped up by excellent base-call quality (mean Q34.3, 89% of bases ≥Q30) and zero detectable adapter contamination, meaning the underlying sequence is clean and trustworthy for alignment and quantification. The single factor dragging the score down is an 88.67% duplication rate, which scored 0/100; in RNA-seq some duplication is expected from genuinely high-expression transcripts, but a level this extreme points to limited library complexity and PCR over-amplification, which can distort expression estimates and undermines any use case sensitive to molecular counts (e.g. differential expression on lowly expressed genes). For reuse, the data are dependable for robustly expressed transcripts but should be treated cautiously where quantitative accuracy or rare-transcript detection matters, especially given the short 49 bp reads that limit splice-junction and isoform resolution.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 578249000 reported
total reads 11801000 reported
n content pct 0.003 measured
pct q20 bases 96.6 measured
pct q30 bases 89 measured
gc content pct 45.6 measured
mean read length 49 measured
mean base quality 34.3 measured
adapter content pct 0 measured
duplication rate pct 88.67 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89 measured ×1 95%
mean base quality 34.3 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 88.67 measured ×0.4 0%
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 89