SRR3883647

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole genome sequencing of Citrus sinensis on an Illumina HiSeq 2000, yielding 38.1 million short reads with good Q30 coverage (89.1%) across 9.5 billion bases. The minimal N-content (0.003%) and moderate GC composition (41%) support comprehensive plant genome assembly and mapping.

Data type / assay

WGS

Organism

Citrus sinensis

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9524006750 reported

total reads 38096027 reported

n content pct 0.003 measured

pct q20 bases 93.6 measured

pct q30 bases 89.1 measured

gc content pct 41 measured

mean read length 125 measured

mean base quality 35 measured

adapter content pct 0.06 measured

duplication rate pct 6.5 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.1 measured ×1 96%

duplication rate pct 6.5 measured ×0.5 100%

adapter content pct 0.06 measured ×0.4 100%

QC cost 50 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0