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SRR391685
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
72/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Oreochromis niloticus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
9.06
measured
checksum ok
yes
reported
total bases
2636311090
reported
total reads
13051045
reported
n content pct
0.003
measured
pct q20 bases
97.2
measured
pct q30 bases
97.2
measured
pct reads q30
97.2
measured
sampled bases
101000000
measured
sampled reads
1000000
measured
gc content pct
47.6
measured
polyg tail pct
0.01
measured
read length sd
0
measured
quality dropoff
0
measured
read length max
101
measured
read length min
101
measured
read length n50
101
measured
max base quality
30
measured
mean read length
101
measured
max n pct per pos
0.13
measured
mean base quality
29.2
measured
pct reads lt 100bp
0
measured
read length median
101
measured
adapter content pct
0
measured
median read quality
30
measured
duplication rate pct
50.74
measured
overrepresented top pct
1.46
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 72/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
97.2
measured
×1
100%
mean base quality
29.2
measured
×0.6
20%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
50.74
measured
×0.4
54%
QC cost
15 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0