Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR3926581

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina HiSeq 2000 whole-genome sequencing (WGS) of Citrus x aurantium (bitter orange) with 46.1 million reads, 11.5 Gb bases, and 88.9% Q20 (81% Q30) provides moderate-quality genome data for this important citrus crop species with complex hybrid genetics. The 41.3% GC and sequencing depth support draft-assembly scaffolding and marker development, though lower Q30 content may limit structural-variant and rare-allele detection.

Data type / assay
WGS
Organism
Citrus x aurantium
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 11521773500 reported
total reads 46087094 reported
n content pct 0 measured
pct q20 bases 88.9 measured
pct q30 bases 81 measured
gc content pct 41.3 measured
mean read length 125 measured
mean base quality 33.2 measured
adapter content pct 0.03 measured
duplication rate pct 3.93 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 81 measured ×1 55%
duplication rate pct 3.93 measured ×0.5 100%
adapter content pct 0.03 measured ×0.4 100%
QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0