Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR3926631

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

78/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina HiSeq 2000 whole-genome sequencing (WGS) of Citrus x aurantium (bitter orange) with 44.3 million reads, 11 Gb bases, and 89.3% Q20 (81.6% Q30) provides moderate-quality genome data for this citrus crop cultivar, supporting marker discovery and comparative genomics across Citrus species. The 41.3% GC and moderate depth suit draft-assembly improvement and synteny analysis more than ultra-rare-variant discovery.

Data type / assay
WGS
Organism
Citrus x aurantium
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 11063362750 reported
total reads 44253451 reported
n content pct 0 measured
pct q20 bases 89.3 measured
pct q30 bases 81.6 measured
gc content pct 41.3 measured
mean read length 125 measured
mean base quality 33.3 measured
adapter content pct 0.02 measured
duplication rate pct 4.17 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 78/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 81.6 measured ×1 58%
duplication rate pct 4.17 measured ×0.5 100%
adapter content pct 0.02 measured ×0.4 100%
QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0