SRR3932794

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

NextSeq 500 whole-genome sequencing (WGS) of Oecobius (small spider genus) with 1.6 million reads, 482 Mb bases, and 93% Q20 (89% Q30) provides low-coverage draft-genome data for a non-model spider species with minimal prior genomic resources. The 35.5% GC and limited depth suit comparative-genomics and phylogenetic applications rather than complete assembly or detailed variant discovery.

Data type / assay

WGS

Organism

Oecobius

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 482238130 reported

total reads 1596815 reported

n content pct 0.052 measured

pct q20 bases 93 measured

pct q30 bases 89 measured

gc content pct 35.5 measured

mean read length 151 measured

mean base quality 33.5 measured

adapter content pct 5.58 measured

duplication rate pct 21.14 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89 measured ×1 95%

duplication rate pct 21.14 measured ×0.5 59%

adapter content pct 5.58 measured ×0.4 67%

QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0